Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015840912.1_cds_XP_016507803.1_20892
CDS Infomation

[gene=LOC107825446] [db_xref=GeneID:107825446] [protein=LOW QUALITY PROTEIN: cucumisin] [transl_except=(pos:1141..1143,aa:Other)] [protein_id=XP_016507803.1] [location=join(154451..154523,155145..155391,156037..156550,158405..158505,158596..158808,158897..159008,159119..159175,159318..159456,159615..160138)] [gbkey=CDS]
Sequence

ATGTACAGCTATAAGAGGAGCTTCAATGGCTTTGCTGCCAAACTGTCCGAGGAAGAGAAG
AAGAGAATCGCAAATATGGAGGCAGTTGTATCAGTGTTCCCAAATGGTAGAAAGGAGCTG
CATACAACTAGGTCATGGGATTTCCTGGGTTTTCCTCAAGAAGTTAAAAGAAGAACAAAT
GTGGAGAACGACCTTATTATAGGAATGCTAGACACTGGAATTTGGCCAGAATCAGAAAGT
TTCAATGACGAAGATTTTGCTGCTCCCCCAAGCAAGTGGAAGGGCACTTGTCAGGCCTCA
GCTAACTTCACTTGCAATAAAAAAATCATCGGAGCCAAGTACTATCGAGTCAATGGAGAA
TTTCCGCCAGGCGACATCCAATCACCAAGAGATACAGAAGGTCATGGATCACACACGGCA
TCAATAGTAGCCGGGCGCTCCGTTAGCAGGGCAAGCTTGTACGGTCTTGGCTCAGGAACA
GCTAGAGGAGGAGTGCCTTCTGCAAGGATAGCTATATATAAAATATGCTGGTCTGATGGT
TGTTCTGATGCTGATATCCTAGCAGCATTTGATGATGCAATTGCAGATGGAGTTGATATA
ATCTCACTCTCAGTAGGAGGGTCTTTACCTTATGAATACTTTGAAGATTCAATAGCCATT
GGAGCTTTCCATTCTATGAAGAATGGAATCCTCACCTCCAATTCTGCAGGCAATTCCGGA
CCTGATCCGCAAACGGTAACCAACCTGTCCCCTTGGTCTCTCTCTGTTGCTGCGAGTACC
ATTGACAGGAGATTTGTCACGGACGTGCAATTAGGAAACGGTGAAGTCTATGAGGGGGTC
TCCATCAACACTTTTGACCTAGAGGACCAGTACCCACTAGTTTATGGTGGAGACGTTCCA
AATACTGCGGCAGGGTATAATGGATCTGAATCCAGGTACTGTGAAGAAAATTCATTGGAC
AAAAGTAAGGTTAGAGGCAAAATTGTGCTCTGCGATTGGACTTACAACGGAACAATTATT
GCTGGAGCTGCTGGAGCTATAATGCCGGATAATGGATTCAAAGATGTTGCATTCTCTTTC
CCCATATCATCTTCATACTTGAGCACAAATGATGGCAACAATATTTACAATTACCTATAT
TAAACACGTAAACCAACTGGAAGAATTTTGAAAAGTAGTGAAAAGAGATCAGAATCTGCC
CCTTTTGTTGTTTCCTTTTCATCAAGAGGACCCAATCAAATTACAAATGACATTCTAAAG
CCTGATCTAAGCGCACCAGGAGTGGACATACTAGCAGCTTGGTCTGAAGGTACAACTATA
AGCGGGGTAGTTCCATACAACATAATTTCCGGCACGTCTATGGCTTGTCCTCATGCTACA
GGAGCAGCTGTCTATGTTAAATCATTCAATCCAACATGGTCTCCTGCTGCTATCAAATCT
GCTCTAATGATTACTGCAACACCTATGAGCTCCAGTGCAAACACTGAGGCAGAATTAGCA
TATGGATTTGGTCAAATAAATCCAATAAAGGCTACACATCCCGGTCTAGTATATGACATG
GGAGAAATTGATTACATAAAATTCTTGTGTGGTCAAGAATACAGTACCAAGAATTTGCAG
ATTATTACAGGGGCTAAGACACCTTGTACTTCTGAAACCAATGTAACTGTTTGGGATCTA
AACTACCCTTCTTTCACAATTTCTTCTTCGAAAAATACAAACATCACCCGAGTATTTCAT
AGGACCGTCACCAACGTTGGTACGCCAGTTTCCACTTACGAGGCAACTGTTGTAGCACCT
GAGGGACTCACCATTCGAGTAGAACCGAGCATTCTTTCGTTCAGATCATTGGGGCAGAAG
CAATCATTCGTGGTGTCAGTGACGGCAGAGATAACTGACTCTATGATATCAGGTTCATTG
GTGTGGGATGACGGGGTGCATCTAGTTAGGAGTCCTGTTGTTGCTTATGTTTCTAATTGA

Peptide Sequence

PEP ID

XP_016507803.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: cucumisin [Nicotiana tabacum]
Sequence

MYSYKRSFNGFAAKLSEEEKKRIANMEAVVSVFPNGRKELHTTRSWDFLGFPQEVKRRTN
VENDLIIGMLDTGIWPESESFNDEDFAAPPSKWKGTCQASANFTCNKKIIGAKYYRVNGE
FPPGDIQSPRDTEGHGSHTASIVAGRSVSRASLYGLGSGTARGGVPSARIAIYKICWSDG
CSDADILAAFDDAIADGVDIISLSVGGSLPYEYFEDSIAIGAFHSMKNGILTSNSAGNSG
PDPQTVTNLSPWSLSVAASTIDRRFVTDVQLGNGEVYEGVSINTFDLEDQYPLVYGGDVP
NTAAGYNGSESRYCEENSLDKSKVRGKIVLCDWTYNGTIIAGAAGAIMPDNGFKDVAFSF
PISSSYLSTNDGNNIYNYLYXTRKPTGRILKSSEKRSESAPFVVSFSSRGPNQITNDILK
PDLSAPGVDILAAWSEGTTISGVVPYNIISGTSMACPHATGAAVYVKSFNPTWSPAAIKS
ALMITATPMSSSANTEAELAYGFGQINPIKATHPGLVYDMGEIDYIKFLCGQEYSTKNLQ
IITGAKTPCTSETNVTVWDLNYPSFTISSSKNTNITRVFHRTVTNVGTPVSTYEATVVAP
EGLTIRVEPSILSFRSLGQKQSFVVSVTAEITDSMISGSLVWDDGVHLVRSPVVAYVSN

Transcript Sequence

Gene sequence data has not been registered.